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I had an initial factory problem where the x-axis was wired opposite to the y & z axis. Solution to this was provided in the manual by changing x-axis to true as follows:

// Inverting axis direction
#define INVERT_X_DIR true
#define INVERT_Y_DIR false
#define INVERT_Z_DIR false

Of course, after fixing that my new issue is that when clicking home the belts attempt to find home in the downward direction of the bed rather than upward where the end-stops are. I can of course temporarily solve this by inverting the direction of all the axis as above, but then although home will be in the right direction all commands will be in reverse which of course I don't want.

If anyone can tell me how to flip the direction of home to the end-stops without inverting all 3 axis, I would very much appreciate it. Thanks in advance

Problem solved thanks to assistance from DavidF. Turns out I had the x & y axes switched on the board.

Solution:

http://forum.seemecnc.com/viewtopic.php?f=37&t=6292